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This tutorial provides a step-by-step protocol to build protein-lipid systems for AMBER using the free version of Maestro bundled with Desmond. In contrast to that of the CHARMM membrane system web ...
MD input files generation with Charmm gui input generator (solution builder), with files generated by pl3 (By converting Docked1.pdb to Docked1.sdf with obabel) MD simulation with local Gromacs or gmx ...
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