Machine learning has revolutionized the design of novel proteins by facilitating the generation of protein sequences that adopt desired structures. State-of-the-art sequence design models optimize the ...
GKMKernel family — gapped k-mer kernels from gkmSVM / LS-GKM (Ghandi et al. 2014; Lee 2016). C-backed, OpenMP-parallel, with full/estimated/truncated mismatch schemes, 6 post-transforms (RBF, poly, ...
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